Large Transformer-based language models can route and reshape complex information via their multi-headed attention mechanism. Although the attention never receives explicit supervision, it can exhibit recognizable patterns following linguistic or positional information. Analyzing the learned representations and attentions is paramount to furthering our understanding of the inner workings of these models. However, analyses have to catch up with the rapid release of new models and the growing diversity of investigation techniques. To support analysis for a wide variety of models, we introduce exBERT, a tool to help humans conduct flexible, interactive investigations and formulate hypotheses for the model-internal reasoning process. exBERT provides insights into the meaning of the contextual representations and attention by matching a human-specified input to similar contexts in large annotated datasets. By aggregating the annotations of the matched contexts, exBERT can quickly replicate findings from literature and extend them to previously not analyzed models.

While deep learning has transformed the natural language processing (NLP) field and impacted the larger computational linguistics community, the rise of neural networks is stained by their opaque nature: It is challenging to interpret the inner workings of neural network models, and explicate their behavior. Therefore, in the last few years, an increasingly large body of work has been devoted to the analysis and interpretation of neural network models in NLP. This body of work is so far lacking a common framework and methodology. Moreover, approaching the analysis of modern neural networks can be difficult for newcomers to the field. This tutorial aims to fill this gap and introduce the nascent field of interpretability and analysis of neural networks in NLP. The tutorial will cover the main lines of analysis work, such as structural analyses using probing classifiers, behavioral studies and test suites, and interactive visualizations. We will highlight not only the most commonly applied analysis methods, but also the specific limitations and shortcomings of current approaches, in order to inform participants where to focus future efforts.

A crucial step within secondary analysis of electronic health records (EHRs) is to identify the patient cohort under investigation. While EHRs contain medical billing codes that aim to represent the conditions and treatments patients may have, much of the information is only present in the patient notes. Therefore, it is critical to develop robust algorithms to infer patients’ conditions and treatments from their written notes. In this paper, we introduce a dataset for patient phenotyping, a task that is defined as the identification of whether a patient has a given medical condition (also referred to as clinical indication or phenotype) based on their patient note. Nursing Progress Notes and Discharge Summaries from the Intensive Care Unit of a large tertiary care hospital were manually annotated for the presence of several high-context phenotypes relevant to treatment and risk of re-hospitalization. This dataset contains 1102 Discharge Summaries and 1000 Nursing Progress Notes. Each Discharge Summary and Progress Note has been annotated by at least two expert human annotators (one clinical researcher and one resident physician). Annotated phenotypes include treatment non-adherence, chronic pain, advanced/metastatic cancer, as well as 10 other phenotypes. This dataset can be utilized for academic and industrial research in medicine and computer science, particularly within the field of medical natural language processing.